Even by instantly flooring the throttle in GT6, it takes a short while for the game to actually raise the throttle input to 100% when using a DS3. This supposedly helps throttle control for beginners, at the cost of added engine response delay. To a limited extent, drive-by-wire electronic throttle control systems in real life act this way too, to increase driving comfort and reduce emissions. In GT6, it could be that with v1.04 this was made even slower than before to help beginners more, since most of them would be using a DS3. However, if you don't press the throttle all the way down you can make the actual thottle input increase increase faster in-game, and by doing so I don't think I'm seeing more turbo lag than usual.
As I said, either this is what happened or only some turbocharged cars seem to behave differently than usual.